1.       Xiao, J., Q. Zhuang, B. E. Law, J. Chen, D. D. Baldocchi, D.R. Cook, R.Oren, A.D. Richardson, S. Wharton, S. Ma, T.A. Martin, S.B. Verma, A.E. Suyker, R. L. Scott, R. K. Monson, M. Litvak, D.Y. Hollinger, G.Sun, P.V. Bolstad, S.P. Burns, P. S. Curtis, B. G. Drake, M. Falk, M. L. Fischer, D.R. Foster, L.Gu, J.L. Hadley, G. G. Katul, R. Matamala, S. McNulty, T.P. Meyers, J. W.Munger, A. Noormets, W. C. Oechel, K.T. Paw U, H.Peter Schmid, G. Starr, M. S. Torn, S. C. Wofsy.   A Continuous Measure of Gross Primary Production for the Conterminous U.S. Derived from MODIS and AmeriFlux Data.  Remote Sensing of Environment (accepted)

2.       Sun, G, A. Noormets, M.J. Gavazzi1, S.G. McNulty, J. Chen, J-C. Domec, J.S. King, D.M. Amatya, and R.W. Skaggs.  Energy and water Balance of two contrasting Loblolly pine plantations on the lower coastal plain of North Carolina, USA. Forest Ecology and Management (in press)

3.       John, R., N. Lu, B. Wilske, and J. Chen.  Land Cover /land use change and their ecological consequences.  Environmental Research Letter (accepted)

4.       Lu, N., B. Wilske, J. Ni, John, R. and J. Chen.  Climate change in Inner Mongolia from 1955 through 2005.  Environmental Research Letter (accepted)

5.       Schwalm, C. R., C. A. Williams, K. Schaefer, A. Arneth, D. Bonal, N. Buchmann, J. Chen, B. Law, A. Lindroth, S. Luyssaert, M. Reichstein, and A. D. Richardson.  Assimilation exceeds respiration sensitivity to drought: A FLUXNET synthesis.  Global Change Biology (in press)

6.       Gorsel, E., N. Delpierre, R. Leuning, A. Black, J. W. Munger, S. Wofsy, M. Aubinet, C. Feigenwinter, J. Beringer, D. Bonal, B. Chen, J. Chen, R. Clement, K. J. Davis, A. Desai, D. Dragoni, S. Etzold, T. Grünwald, L. Gu, B. Heinesch, L.R. Hutyra, W.P. Jans, W. Kutsch, B.E. Law, M. Y. Leclerc, I. Mammarella, L. Montagnani, A. Noormets, C. Rebmann, and W. Sonia.  Estimating nocturnal ecosystem respiration from the vertical turbulent flux and change in storage of CO₂.  Agricultural and Forest Meteorology (in press)

7.       Noormets, A. M. Gavazzi, S. McNulty, G. Sun, J.C. Domec, J. King, and J. Chen. Resilience of carbon fluxes to drought in a coastal plain loblolly pine forest.  Global Change Biology (in press)

8.       Yuan, W., Y. Luo., A.D. Richardson, R. Oren, S. Luyssaert, I.A. Janssens, R. Ceulemans, T. Grünwald, M. Aubinet, C. Bernhofer, D. D. Baldocchi, J. Chen, A.L. Dunn, J. Deforest, A. H. Goldstein, E. Moors, J. W. Munger, R. K. Monson, A.E. Suyker, G. Starr, R. L. Scott, J. Tenhunen, S. B. Verma, T. Vesala, and S. C. Wofsy.   2009.  Latitudinal patterns of interannual variability in net ecosystem exchange.  Global Change Biology 15: 2905-2920.

9.       LaCroix, J.J. Q. Li, S. Ryu, D. Zheng, and J. Chen.  Edge effects on fuel loading and fire spread in a managed northern Wisconsin landscape.  In xxx (eds.).  In Kafatos and Qu, Introduction to Earth Science Satellite Remote Sensing, Earth Science Satellite Remote Sensing, Springer and Tsinghua University Press  (accepted).

10.   Zheng, D., J.J. LaCroix, S. Ryu, J. Chen, J. Hom, and K. Clark^.    Fire spread regulated by weather, landscape structure, and management in Wisconsin hardwoods and New Jersey Pinelands.  In Kafatos and Qu, Remote Sensing and Modeling Applications to Wildland Fires, Springer and Tsinghua University Press (accepted).

11.   Chen, S., J. Chen, G. Lin, W. Zhang, H. Miao, L. Wei, J. Huang, and X. Han.  2009.  Energy balance and partition in Inner Mongolia steppe ecosystems with different land use types. Agricultural and Forest Meteorology149: 1800-1809.  [PDF]

12.   Miao, H, S. Chen., J. Chen, W. Zhang, P. Zhang, L. Wei, X. Han, and G. Lin.  2009.  Cultivation and grazing altered evapotranspiration and dynamics in Inner Mongolia stepps.  Agricultural and Forest Meteorology  149: 1810-1819.  [PDF]

13.   Guo, H., A. Noormets, B. Zhao, J. Chen, G. Sun, Y. Gu, B. Li, and J.K. Chen.  2009.  Tidal effects on ecosystem carbon exchange of an estuarine wetland.  Agricultural and Forest Meteorology 149: 1820-1828.  [PDF]

14.   Noormets, A., J. Chen, L. Gu, and A. Desai. 2009. The phenology of gross ecosystem productivity and ecosystem respiration in temperate hardwood and conifer chronosequences. Pages 59- 86,  In: A. Noormets (Ed.) Phenology of ecosystem processes. Springer, New York, 275pp.

15.   Martin, J., P. Bolstad, S-R Ryu, and J. Chen.  2009.  Modeling soil respiration based on carbon, nitrogen, and root mass across diverse Great Lake forests. Agricultural and Forest Meteorology 149: 1722-1729.  [PDF]

16.   Liu, C., Z. Zhang, G. Sun, J. Zhu, T. Zha, L. Shen, J. Chen, X. Fang and J. Chen.  2009.  Quantifying evapotranspiration and the biophysical regulations of a poplar plantation assessed by eddy covariance and sap flow methods.  Journal of Plant Ecology 33(4): 706-718. [PDF]

17.   Groisman, P. Y., E. A. Clark, V. M. Kattsov, D. P. Lettenmaier, I. N. Sokolik, V.B. Aizen, O. Cartus, J. Chen, S. Conard, J.Katzenberger, O. Krankina, J. Kukkonen, T. Machida, S. Maksyutov, D. Ojima, J. Qi, V. E. Romanovsky, M. Santoro, C. Schmullius, A. I. Shiklomanov, K. Shimoyama, H. H. Shugart, J. K. Shuman, M. Sofiev, A. I. Sukhinin, C. Vörösmarty, D. Walker, and E. F. Wood.  2009.  The Northern Eurasia earth science partnership: an example of science applied to societal needs.  Bulletin of the American Meteorological Society 5: 671-688.  [PDF]

18.   Wilske B., N. Lu, L.Wei, S. Chen, T. Zha, C. Liu, W. Xu, A. Noormets,J. Huang,  Y. Wei, J. Chen, Z. Zhang, J. Ni, G. Sun, K. Guo, S. McNulty, R. John,  X. Han, G. Lin, J. Chen.  2009.   Poplar plantation has the potential to alter water balance in semiarid Inner Mongolia.  Journal of Environmental Management 90: 2762-1770. [PDF]

19.   DeForest, J., J. Chen, and S. G. McNulty.  2009.  Leaf litter is an important mediator of soil respiration in an oak-dominated forest.  International Journal of Biometeorology 53: 127-134 [PDF]

20.   Ryu, S.R., A. Concilio, J. Chen, M. North, and S. Ma.  2009.  Prescribed burning and mechanical thinning effects on belowground conditions and soil respiration in a mixed-conifer forest, California.  Forest Ecology and Management 257: 1324-1332.  [PDF]

21.   Concilio, A., J. Chen, S. Ma, and M. North.  2009.  Precipitation drives interannual variation in soil respiration in an experimental forest.  Climatic Change 92: 109-122 [PDF]

22.   Li, Q., D. L .Moorhead, J. L. DeForest, and J. Chen, R. Henderson, R. Jenson.  2009.  Mixed litter decomposition in a manage med Missouri Ozark forest ecosystem.  Forest Ecology and Management 257: 688-694. [PDF]

23.   Heckathorn, SA. and J. Chen.  2008.  Editorial - Plants and Global Environmental Change: A Special Issue Highlighting Younger Scientists.  Journal of Integrative Plant Biology 50: 1337-1338.

24.   Chen, J, S. D. Bridgham, J. Keller, J.Pastor, A. Noormets, and J. F. Weltzin. 2008.  Temperature responses to infrared-Loading and water table manipulations in peatland mesocosms.  Journal of Integrative Plant Biology 50: 1484 – 1496. [PDF]

25.   LaCroix, J.J. Q. Li, J. Chen, R. Henderson, R. John. 2008.  Edge effects on fire spread in a disturbed Northern Wisconsin landscape.  Landscape Ecology 23: 1080-1092. [PDF]

26.   Chen, J., K.D. Brosofske., R. Lafortezza.  2008.  Ecology and management of forested landscapes.  Pages 3-16, In:  Lafortezza et al.  (eds).  Patterns and Processes in Forest Landscapes.  Springer-Verlag. 425 pp. [PDF]

27.   Chen, J.  2008.  Ecological modeling and perspectives of forest landscape – A Synthesis.  Pages 265-270, In:  Lafortezza et al.  (eds).  Patterns and Processes in Forest Landscapes.  Springer-Verlag. 425 pp. [PDF]

28.   Xiao, J.,Q. Zhuang; D. D. Baldocchi, B.E. Law, A. D.Richardson, J. Chen; R. Oren; G. Starr,  A. Noormets, S. Ma, S, B Verma, S, Wharton, S, C, Wofsy, P, V, Bolstad, S. P. Burns, D. R. Cook, P. S. Curtis, B. G. Drake, M. Falk, M. L. Fischer, D. R. Foster, L. Gu, J. L. Hadley, D. Y. Hollinger, G. G. Katul, M. Litvak, T.A. Martin, R. Matamala, S. McNulty, T. P. Meyers, R.K. Monson, J. W. Munger, W. C. Oechel, K.T. Paw U, H.P. Schmid, R. L. Scott, G. Sun, A.E. Suker, M. S. Torn.  Estimation of net ecosystem carbon exchange for the conterminous United States by combining MODIS and AmeriFlux data.  Agricultural and Forest Meteorology 148: 1827-1847. [PDF]

29.   Wei, YF, K. Guo, and  J. Chen.  2008.  Effect of precipitation pattern on recruitment of soil water in Kubuqi desert, northwestern China.  Journal of Plant Ecology 6: 1346-1355. [PDF]

30.   Shao, C., J. Chen, L. Li, W. Xu, S. Chen, G. Tenney, J. Xu, W. Zhang.  2008.  Spatial variability in soil heat flux at three Inner Mongolia steppe ecosystems.  Agricultural and Forest Meteorology 148: 1433-1443 [PDF]

31.   Noormets, A., S. McNulty , J. DeForest, G. Sun , Q. Li , J. Chen. 1008.  Drought during canopy development has lasting effect on annual carbon balance in a deciduous temperate forest.  New Phytologist 179: 818-828.  New Phytologist 179: 818-828.  [PDF]

32.   Yan, Y, B. Zhao, J. Chen, H. Guo, Y. Gu, Q. Wu and B. Li.  2008.  Closing the carbon budget of estuarine wetlands with tower-based measurements and MODIS time series.  Global Change Biology 14: 1690-1702. [PDF]

33.   Chen, J.  2008.  Book review  on A Changing World: Challenges for Landscape Research Felix F. Kienast, Otto Wildi, and Suchartia Ghosh (eds.).  Landscape Ecology 23: 753-754 [PDF]

34.   Chen, J., Bin Zhao, W. Ren, S. C. Saunders, Z. Ma, B. Li, Y. Luo and J. Chen.  2008.  Invasive Spartina and reduced sediments:  Shanghai’s dangerous silver bullet.  Journal of Plant Ecology 1(2): 79-84. [PDF]

35.   Cheng, X., J. Chen, Y. Luo, R. Henderson, S. An, Q. Zhang, J. Chen and B. Li.  2008.  Assessing the effects of short-term Spartina alterniflora invasion on labile and recalcitrant C and N pools by means of soil fractionation and stable C and N isotopes.  Geoderma 145: 177-184. [PDF]

36.   John, R., J.Chen, N. Lu, K.Guo, C. Liang, Y. Wei, A. Noormets, K. Ma, and X. Han.  2008.  Predicting plant diversity based on remote sensing products in the semi-arid region of Inner Mongolia. Remote Sensing of Environment 112: 2018-2032. [PDF]

37.   Chen, J. K. J. Davis, T. Meyers.  2008.  Ecosystem-Atmosphere Carbon and Water Cycling in the Upper Great Lakes Region.  Agricultural and Forest Meteorology 148: 155-157. [PDF]

38.   Noormets, A., A, Desai, D. M. Ricciuto, B. Cook, K. Davis, P. Bolstad, H. Schmid, P. Curtis, E.V. Carey, H.B. Su, and J. Chen.  2008.  Moisture sensitivity of ecosystem respiration: comparison of 14 forest ecosystems in northern Wisconsin, USA.  Agricultural and Forest Meteorology 148: 216-230. [PDF]

39.   Ryu, S-R, J. Chen, A. Noormets A, M.K. Bresee, S.V. Ollinger. 2008. Comparisons between PnET-Day and eddy covariance based gross ecosystem production in two Northern Wisconsin forests.  Agricultural and Forest Meteorology 148: 247-1256. [PDF]

40.   Sun, G., A. Noormets, J. Chen, and S. G. McNulty.  2008.  Evapotranspiration Estimates from Eddy Covariance Towers and Hydrologic Modeling in Managed Forests in Northern Wisconsin, USA.  Agricultural and Forest Meteorology  148: 257-267. [PDF]

41.   Desai, A., A. Noormets, P. Bolstad, J. Chen, B. Cook, K. Davis, E. Euskirchen, C. Gough, J. M. Martin, D. M. Ricciuto, H. Schmid, J. Tang, W. Wang.  2008.  Influence of vegetation and seasonal forcing on carbon dioxide fluxes across the Upper Midwest, USA: Implications for regional scaling.   Agricultural and Forest Meteorology 148: 288-308. [PDF]

42.   Li, L. J. Chen, J. L. DeForest, R. Jensen, D. L. Moorhead, and R. Henderson.  2007.  Effects of timber harvest on carbon pools in Ozark forests. Canadian Journal of Forest Research 37: 2337-2348. [PDF]

43.   Ryu, J. Chen, D. Zheng, and J.J. LaCroix. 2007.  Relating surface fire spread to alternative landscape management: an application of FARSITE in a managed forest landscape.  Landscape and Urban Planning 83: 275-283 [PDF].

44.   Zhang, W.L., S.P. Chen, J. Chen, L. Wei, X.G. Han, G.H. Lin.  2007.  Biophysical regulations of carbon fluxes of a steppe and a cultivated cropland in semiarid Inner Mongolia.  Agricultural and Forest Meteorology 146: 216-229. [PDF]

45.   Noormets, A., J. Chen, T.R. Crow.  2007.  Age-dependent changes in ecosystem carbon fluxes in managed forests in northern Wisconsin, USA. Ecosystems 10: 187-203 [PDF]

46.   Cheng,, X., R. Peng, J. Chen, Y. Luo, Q. Zhang, S. An, J. Chen and B.Li.  2007.  CH₄ and N₂O emissions from Spartina alterniflora and Phragmites australis in experimental mesocosms.  Chemosphere 68: 420-427. [PDF]

47.   Li, Q., J. Chen, B. Song, M.K. Bresee, J.A. Rademacher, and J.J. LaCroix.  2007.  Areas influenced by multiple edges and their implications in fragmented landscapes.  Forest Ecology and Management 242:99-107.  [PDF]

48.   Cheng, X., S. An, J.Chen, B. Li, Y. Luo, J. Chen, S. Liu, and Y. Liu.  2007.  Spatial relationships among species, aboveground biomass, N, and P in disturbed prairie communities. Journal of Arid Environment 68: 652-667. [PDF]

49.   LaCroix, J., S.-R. Ryu, D. Zheng and J. Chen.   2006.  Simulating fire spread with landscape management scenarios.  Forest Science 5: 522-529 [PDF]

50.   DeForest, J.L., A. Noormets, S. McNulty, G. Sun, G. Tenney, and J. Chen.  2006.  Phenophases alter the soil respiration-temperature relationship in an oak-dominated forest.  International Journal of Biometeorology 51: 135-144 [PDF]

51.   Guo, Z., X. Zhang, L., Huang, G. Ju, and J. Chen.  2006.  Light and water use efficiencies of Quercus mongolica across an edge of a deciduous forest. Acta Ecologica Sinica 26: 1047-1056.  [PDF]

52.   Cheng, X., Y. Luo, J. Chen, G. Lin, J. Chen, and B. Li.  2006.  Short-term C4 plant Spartina alterniflora invasions change the soil carbon in C3 plant-dominated tidal wetlands on a growing estuarine island.  Soil Biology and Biochemistry 38:3380-3386 [PDF]

53.   Wang, X., B. Song, J J. Chen^, Thomas R. Crow, and J. LaCroix. 2006.  Challenges in visualizing forests and landscapes.  Journal of Forestry 104(6): 316-319. [PDF]

54.   Silbernagel, K. J. Chen, A. Noormets, and B. Song.  2006.  Conducting Sound Ecological Studies at the Landscape Scale:  Hypotheses, Experiments, and Challenges.  In: Ecology to hierarchical landscapes: from theory to application (Eds. Jiquan Chen, Sari C. Saunders, Kimberly D. Brosofske, and Thomas R. Crow), Nova Publishing, Carbondale, IL, USA, pp. 283-299.  311 pp.

55.   Noormets A., B. Ewers, G. Sun, S. Mackay, D. Zheng, S. McNulty, and J. Chen.  2006. Linking ecology to land mosaics: an ecosystem perspective. In: Ecology to hierarchical landscapes: from theory to application (Eds. Jiquan Chen, Sari C. Saunders, Kimberly D. Brosofske, and Thomas R. Crow), Nova Publishing, Carbondale, IL, USA, pp. 89-124.  311 pp.

56.   Chen, J. S.C. Saunders.  2006.  Ecology of multiple ecosystems in time and space.  In: Ecology to hierarchical landscapes: from theory to application (Eds. Jiquan Chen, Sari C. Saunders, Kimberly D. Brosofske, and Thomas R. Crow), Nova Publishing, Carbondale, IL, USA, pp. 1-34. 311 pp.

57.   Song, B., X. Wang, T. Williams, D. J. Mladenoff, J. Chen, E. J. Gustafson, J. L. Hom, and T. R. Crow.  2006. Visualizing a Landscape, Its Changes, and Driving Processes.  In: Linking ecology to landscape hierarchies (Eds. Jiquan Chen, Sari C. Saunders, Kimberly D. Brosofske, and Thomas R. Crow), Nova Publishing, Carbondale, IL, USA, pp. 167-192. 311 pp.

58.   Liu, C, Z. Zhang, T., G. Sun, J. Chen, J. Zhu, L. Shen, J. Zhang, J. Chen, L. Cui.  2006.  Soil moisture affects energy allocation and diurnal evapotranspiration of a poplar plantation – an eddy-covariance-based study. Acta Ecologica Sinica 26(8): 2549-2557. [PDF]

59.   Ryu, S., J. Chen, D. Zheng, M. Bresee.  2006.  Simulating the effects of age structure and disturbances on fuel loading (EcoFL) in forest ecosystems of Northern Wisconsin, USA.  Ecological Modelling 196: 395-406 [PDF]

60.   Zhang, J, Z. Zhang, T. Zha, J. Chen, G. Ge ，C.Liu, L. Cui, J., and L. Shen.  2006.  Physiological regulations of photosynthesis in a poplar plantation on a sandy soil.  Acta Ecologica Sinica 26(5): 1523-1532. [PDF]

61.   Cheng, X., S. An, B. Li, J. Chen, G. Lin, Y. Liu, Y. Luo, and S. Liu.  2006.  Summer rain pulse size and rainwater uptake by three dominant desert plants in a desertified grassland ecosystem in northwestern China.  Plant Ecology 184: 1-12. [PDF]

62.   Concilio, A., S. Ma, S.R. Ryu, M. North, and J. Chen.  Soil respiration response to burning and thinning from one to three years after experimental treatments.  Forest Ecology and Management 228: 82-90. [PDF]

63.   Cao, W., G. Sun, S. McNulty, J. Chen, A. Noormets, R.W. Skaggs, and D.M. Amatya.  2006.  Evapotranspiration of a mid-rotation loblolly pine plantation and a recently harvested stands on the coastal plain of North Carolinam U.S.A.  Proceedings of Society of Agricultural and Biological Engineers (ASABE), Pages 27-33. [PDF]

64.   DeForest, J., G. Sun, A. Noormets, J. Chen, S. McNulty, M Gavazzi, D.M. Amatya, and R.W. Skaggs.  2006.  Carbon and water fluxes in a drained coastal clearcut and a pine plantation in eastern North Carolina.  Proceedings of Society of Agricultural and Biological Engineers (ASABE), Pages 587-597.  [PDF]

65.   Euskirchen, E. S., K. S. Pregitzer, and J. Chen. 2006.  Carbon fluxes in a young, naturally regenerating jack pine ecosystem, Journal of Geophysical Research 111, D01101, doi:10.1029/2005JD005793. [PDF]

66.   Wang, W, B. Song, J. Chen, D. Zheng, and T.R. Crow.  2006.  Visualizing forest landscapes using public data sources.  Landscape and Urban Planning 75: 111-124. [PDF, Web]

67.   Zheng, D., J. Chen, J. Le Moine, and E. S. Euskirchen.  2005.  Influences of land-use change and edges on soil respiration in a managed forest landscape, WI.  Forest Ecology and Management 215: 169-182 [PDF]

68.   Concilio, A. S. Ma, Q. Li, J. LeMoine, J. Chen, M. North, D. Moorhead, and R. Jensen.  2005.  Soil respiration response to experimental disturbance in mixed conifer and hardwood forests.  Canadian Journal of Forest Research 35: 1581-1591 [PDF].

69.   Weltzin, J.F., J.K. Keller, S.D. Bridgham, J. Pastor, P.B. Allen, and J. Chen.  2005. Controls plant community composition in a northern fen.  Oikos 110: 537-546.   [PDF]

70.   Jiang, L., F. Shi, B. Li, Y. Luo, J. Chen, and J. Chen.  2005.  Separating root respiration from total soil respiration in two larch plantations in northeastern China.  Tree Physiology 25: 1187-1195. [PDF]

71.   Chen, J., B. Lu, Y. Luo, Q. Dong. 2005.   Scientific writing and key steps.  Pages 198-222, In Chen et al. (eds.), Challenges facing ecologists: questions and approaches, Higher Education Press, Beijing, China. 244pp.

72.   Chen, J., X. Cheng, and R. Peng.  2005.  Applications of spatial statistics in ecological research.  Pages 145-170, In Chen et al. (eds.), Challenges facing ecologists: questions and approaches, Higher Education Press, Beijing, China. 244pp.

73.   Harper, K.A., S.E. MacDonald, P.J. Burton, J. Chen, K.D. Brosofske, S.C. Saunders, E.S. Euskirchen, D. Roberts, M.S. Jaiteth, and P. –A Esseen.  2005.  Edge influence on forest structure and composition in fragmented landscapes.  Conservation Biology 19(3): 768-782. [PDF]

74.   Ma, S., J. Chen, J.R. Butnor, M. North, E.S. Euskirchen, and B. Oakley.  2005.  Biophysical controls on soil respiration in dominant patch types of an old-growth mixed conifer forest.  Forest Science 51:221-232 [PDF]

75.   North, M. and J. Chen.  2005.  Introduction to the special issue on Sierran Mixed-Conifer Research.  Forest Science 51(3): 185-186. [PDF]

76.   Shaw, D.C., J. Chen, E.A. Freeman, D.M Braun. 2005. Spatial and population characteristics of mistletoe-infected trees in an old-growth forest.  Canadian Journal of Forest Research 35(4): 990-1001  [PDF]

77.   Zheng, D., J. Chen, A. Noormets, J. Le Moine, and E. Euskirchen.  2005.  Effects of climate and land use on landscape soil respiration in northern Wisconsin, USA: 1972 to 2001.  Climate Research 28: 163-173. [PDF]

78.   Saunders, S.C., J. Chen, T.D. Drummer, E.J. Gustafson, and K.D. Brosofske.  2005.  Identifying scales of pattern in ecological data: a comparison of Lacunarity, spectral and wavelet analyses.  Ecological Complexity 2: 87-105. [PDF]

79.   Zheng, D., J. Rademacher, J. Chen, T. Crow, M. Bresee, J. Le Moine, and S.R. Ryu.  2004.  Estimating aboveground biomass using Landsat 7 ETM+ data across a managed landscape in northern Wisconsin, USA.  Remote Sensing of Environment 93: 402-411  [PDF]

80.   Noormets, A., J. Chen, S. Bridgham, J. Pastor, J. Weltzin, B. Deway, J. Le Moine.   2004.  The effects of infrared loading and water table on soil energy fluxes in northern peatlands.  Ecosystems 7(5): 573-582.  [PDF]

81.   Roberts, D., S.L Ustin, S. Ogunjemiyo, J. Greenberg, S.Z. Dobrowski, J. Chen, and T. Hinkley.  2004.  Spectral and structural measures of northwest forest vegetation at leaf to landscape scales.  Ecosystems 7(5): 545-562. [PDF]

82.   Chen, J, K.D. Brosofske, A. Noormets, T.R. Crow, M.K. Bresee, J.M. Le Moine, E.S. Euskirchen, S.V. Mather, and D. Zheng.  2004.  A working framework for quantifying carbon sequestration in disturbed land mosaics.  Environmental Management 34 (3): S210-221. [PDF].

83.   Ma, S., J. Chen, M. North, H. Erickson, and M. Bresee. 2004.   Short-term Effects of Experimental Treatments on Soil Respiration in an Old-Growth, Mixed-Conifer Forest.  Environmental Managemen 34 (4):  S148-159. [PDF].

84.   Ryu, S., J. Chen, T.R. Crow, and S.C. Saunders.  2004.  Available fuel dynamics in nine contrasting forest ecosystems in north america.  Environmental Management 34(3): S87-107. [PDF]

85.   North, M., J. Chen, B. Oakley, B. Song, M. Rudnicki, and A. Gray.  2004. Forest stand structure and pattern of old-growth western hemlock/Douglas-fir and mixed-conifer forests.  Forest Science 50(3) : 299-311. [PDF]

86.   Chen, J., B. Song, M. Moeur, M.Rudnicki, K.Bible, D.C. Shaw, D.M. Braun, and J.F. Franklin.  2004.  Spatial relationships of production and species distribution in an old-growth pseudotsuga-tsuga forest.  Forest Science 50(3): 364-375 [PDF]

87.   Song, Bo, J. Chen, and J.M. Silbernagel.  2004.  Slicing the 3-D canopies of an Old-growth Douglas-fir forest for structural analysis.  Forest Science 50(3): 376—386 [PDF]

88.   Parker, G.G., M.E. Harmon, M.A. Lefsky, J. Chen, R. Van Pelt, S.B. Weiss, S.C. Thomas, W.E Winner, D.C. Shaw, and J.F. Franklin.  2004.  Three-dimensional structure of an old-growth Pseudotsuga-Tsuga canopy and its implications for radiation balance, microclimate, and gas exchange.  Ecosystems 7(5): 440-453. [PDF]

89.   Chen, J., K.T. Paw U, S. Ustin, T. Suchanek, B.J. Bond, K.D. Brosofske, and M. Falk.  2004.  Net ecosystem exchanges of carbon, water, and energy in young and old-growth Douglas-Fir forests.  Ecosystems 7(5): 534-544.  [PDF]

90.   Mariscal, M.J., S.N. Martens, S. L. Ustin, J. Chen, S. B. Weiss and D.A. Roberts.  2004.  Light-transmission profiles in an old-growth forest canopy: simulations of photosynthetically active radiation by using spatially explicit radiative transfer models.  Ecosystems 7(5): 454-467. [PDF]

91.   Paw U, K.T, M. Falk, T.H. Suchanek, S.L. Ustin, J. Chen, G.G. Parker, W. E. Winner, S. C. Thomas, T. C. Hsiao, R. H. Shaw, T. S. King, R. D. Pyles, M. Schroeder and A. A. Matista.  2004. Carbon dioxide exchange between an old-growth forest and the atmosphere.  Ecosystems 7(5): 513-524.  [PDF].

92.   Bresee, M., J. Le Moine, S. Mather, T. Crow, K. Brosofske, J. Chen, T.R. Crow, and J. Radmacher.  2004.  Disturbance and landscape dynamics in the Chequamegon National Forest Wisconsin, USA, from 1972 to 2001.   Landscape Ecology 19(3): 291-309.  [PDF]

93.   Xu, M., Y. Qi, J. Chen, and B. Song.  2004.  Scale-dependent relationships between landscape structure and microclimate. Plant Ecology 173(1): 39-57. [PDF]

94.   Euskirchen, E., J. Chen, E.G. Gustafson, and S. Ma.  2003.  Soil respiration at dominant patch types within a managed northern Wisconsin landscape. Ecosystems6: 595-607 [PDF]

95.   Weltzin, J.F., S.D. Bridgham, J. Pastor, J. Chen, and C. Harth.  2003.  Potential effects of warming and drying on peatland plant community composition. Global Change Biology 9: 141-151.  [PDF]

96.   Watkins Z, J. Chen, J. Pickens, and K. Brosofske. 2003.   Effects of forest roads on understory plants in a managed hardwood landscape.  Conservation Biology17(2): 411-419. [PDF]

97.   LeMoine, J, M. and J. Chen.  2003.  Placing our research objectives and results in time and space.   Acta Phytoecologica Sinica 27(1): 1-10. [PDF]

98.   North, M., B. Oakley, J. Chen, H. Erickson, A. Gray, A. Izzo, D. Johnson, S. Ma, J. Marra, M. Meyer, K. Purcell, B. Roath, T. Rambo, D. Rizzo, T. Schowalter.  2003.  Vegetation and ecological characteristics of mixed-conifer and red-fir forests at the Teakettle Experimental Forest.  USFS General Technical Report, PSW-GTR.

99.   Pastor, J., B. Peckham, S. Bridgham, J. Weltzin, and J. Chen.  2002.  Plant community dynamics, nutrient cycling, and multiple stable equilibria in peatlands.  American Naturalist 160(5): 553-568.  [PDF]

100.            Thornton, P.E., B.E. Law, H.L. Gholz, K.L. Clark, E. Falge, D.S. Ellsworth, A.H. Goldstein, R.K. Monson, D. Hollinger, M. Falk, J. Chen, and J.P. Sparks.  2002.  Modeling and measuring the effects of disturbance history and climate on carbon and water budgets in evergreen needleaf forests.  Agricultural and Forest Meteorology 113: 185-222.  [PDF]

101.            Euskirchen, E., J. Chen, H. Li, E. J. Gustafson, and T.R. Crow.  2002.  Modeling net carbon flows under alternative management regimes at a landscape level.  Ecological Modelling 154: 75-91.  [PDF]

102.            Xu, M., Chen, J., and Y. Qi. 2002. Growing-season temperature and soil moisture along a 10km transect across a forested landscape. Climate Research 22:57-72. [PDF]

103.            Saunders, S.C., J. Chen, T.D. Drummer, T.R. Crow, K.D. Brosofske, and E. J. Gustafson.  2002.  The patch mosaic and ecological decomposition across spatial scales in a managed landscape of northern Wisconsin, USA.  Basic and Applied Ecology 3: 49-64. [PDF]

104.            Chen, J.  2002.  Book review, “Landscape Ecology: a Top-Down Approach”.  Ecological Engineering 526-527.

105.            Chen, J.  2002.  Book review, “Spreadsheet exercises in conservation biology and landscape ecology”.  Landscape Ecology (3/4/2002).

106.            Franklin, J.F., T.A. Spies, R. Van Pelt, A. B. Carey, D.A. Thornburgh, D. R. Berg, D. B. Lindenmayer, M. E. Harmon, W. S. Keeton, D.C. Shaw, K. Bible, and J. Chen.  2002.  Disturbances and structural development of natural forest ecosystems with silvicultural implications, using Douglas-fir forests as an example.  Forest Ecology and Management 155: 399-423.  [PDF]

107.            Saunders, S.C., M. R. Mislivets, J. Chen, and D.T. Cleland.  2002.  Effects of roads on landscape structure within nested ecological units of the Northern Great Lakes Region, USA.  Biological Conservation 103: 209-225. [PDF]

108.            Chen, J., M. Matthias Falk, E. Euskirchen, K.T. Paw U, T. H. Suchanek, S. L. Ustin, B. J. Bond, K. Brosofske, N. Phillips, and R, Bi.  2002.  Biophysical controls of carbon flows in three successional Douglas-fir stands based on eddy-covariance measurements.  Tree Physiology 22(2/3): 22:169–177.  [PDF]

109.            Chen, J., C. Hubner, S.C. Saunders, and B. Song.  2002  Plant. Distribution and diversity across an Ozark landscape.  USDA GTR.  In S.R. Shifley and J.M. Kabrick (Eds.).  Proceedings of the Second Missouri Ozark Forest Ecosystem Symposium: Post treatment results of the landscape experiment. General Technical Report NC, USDA Forest Service, North Central Research Station, St. Paul, MN, Pages 45-65. [PDF]

110.            Chen, J.  2002. Managing landscapes for ecological reasons.  In: Wu, J. and X. Han (Eds). 2002 Lectures in Modern Ecology II: from Basic Science to Environmental Issues.  High Education Press, Beijing, Pages 178-190

111.            Silbernagel, J. J. Chen, and B. Song.  2001.  Winter temperature changes across an old-growth Douglas-fir forest edge.  Acta Ecologica Sinica 21(9): 1403-1412. [PDF]

112.            Xu, Z., L. Dai, J. Chen, Z. Wang,, H., Dai, and X. Li.  2001.  Natural regeneration condition in Pinus koraiensis broad-leaved mixed forests.  Acta Ecologica Sinica 21(9): 1413-1420. [PDF]

113.            Brosofske, K.D., J. Chen, T. R. Crow.  2001.  Understory Vegetation and Site Factors: Implications for a Managed Wisconsin Landscape.  Forest Ecology and Management 146:75-87. [PDF]

114.            Euskirchen, E.S, J. Chen, and R. Bi.  2001.  Effects of Edges on Plant Communities in a Managed Landscape in Northern Wisconsin.  Forest Ecology and Management 148: 93-108. [PDF]

115.            Zheng, D., H. Cui, and J. Chen.  2000.  Satellite-based remote sensing and applications in ecosystem studies and management.  Climate Change and Ecological Responses.  Pages 177-190, Edited by Fang Jingyun and J. Lin. Higher Science Education, Beijing, P.R. China.  [PDF]

116.            Shao, G., Q. Liu, H. Qian, J. Chen, J. Ma, and Z. Tan.  2000.  The discoverer of Metasequoia: Zhan Wang.  Taxon: 593-601. [PDF]

117.            Xu, M., Y. Qi, J. Chen, and W. Yin.  2000.  Effects of spatial heterogeneity of microenvironment on plant biodiversity in the Southeastern Missouri Ozarks.  Journal of Geographic Information Sciences 6(1): 1-6. [PDF]

118.            Zheng, D. and J. Chen.  2000.  Edge effects in fragmented landscapes: a generic model for delineating area of edge influences (D-AEI).  Ecological Modelling 132/3: 75-190.  [PDF]

119.            Chen, J., 2000.  Book Review on Forest Ecosystems: Analysis at Multiple Scales By Waring and Running, Forest Ecology and Management 127: 285-286. [PDF]

120.            Rudnicki, M, and J. Chen.  2000. Relating climate and radial increment of  Tsuga heterophylla in an old-growth Douglas-fir forest in southern Washington.  Northwest Sciences 74(1): 57-68. [PDF]

121.            Zheng, D., J. Chen, B. Song, M. Xu, P. Sneed, and R. Jensen.  2000.  Effects of silvicultural treatments on forest microclimate in Southeastern Missouri Ozarks.  Climate Research 15: 45-59.  [PDF]

122.            Euskirchen, E.S., R. Watkins, and J. Chen.  2000.  Effects of roads and edges in a fragmented landscape in northern Wisconsin, USA.  Pages 156-158.  In: A New Era of Ecology, Ecological Society of China.  Beijing. China.  [PDF]

123.            Bridgham, S.D., J.Pastor, K. Updegraff, T.J. Malterer, K.  Johnson, C. Harth, and J. Chen.  1999. Ecosystem control over temperature and heat flux will modulate climate change effects on northern peatlands.  Ecological Applications 9: 1345‑1358. [PDF]

124.            King, T., Paw U, K.T., Hsiao, T., Falk, M., Moles, A., Matista, A, and Chen, J.  Carbon dioxide, water vapor, sensible heat, and momentum fluxes in and above an old growth coastal temperate rainforest.  1999.  The 23^rd Conference on Agricultural and Forest Meteorology, Nov. 2-6, 1998, Albuquerque, NM, American Meteorological Society, Boston.  Pages 32-33. [PDF]

125.            Saunders, S.C., J. Chen, T.D. Drummer, and T.R. Crow.  1999. Modeling temperature gradients across edges over time in a managed landscape.  Forest Ecology and Management 117: 17-31.  [PDF]                                                            

126.            Brosofske, K.D., J. Chen, T. R. Crow, and S. C. Saunders.  1999.  Vegetation responses to landscape structure at multiple scales across a northern Wisconsin pine barren landscape.  Plant Ecology 143(2): 203‑218. [PDF]

127.            Chen, J.  S.D. Saunders, T. Crow, K.D. Brosofske, G. Mroz, R.NAIMAN, B. Brookshire, and J. Franklin.  1999.  Microclimatic in forest ecosystems and landscapes.  Bioscience 49(4): 288-297.  [PDF]

128.            Chen, J. and G.A. Bradshaw.  1999.  Forest structure in space: a case study of an old growth spruce-fir forest in Changbaishan Natural Reserve (CNR), P.R. China.  Forest Ecology and Management 120: 219-233.  [PDF]

129.            Chen, J., H. A. Londo, R. Megown, Q. Zhang, B. Boelema, S. Glade, E. Heitzman, A. Hoefferle, L. Jacob, A. Londo, K. Markovic, K. Owens, C. Pappas, and M. Plante.   1999.  Stream structure across five mountainous watersheds in the continental United States.  Acta Ecologica Sinica 19(1): 31-41. [PDF]

130.            Dong, J., J. Chen, K.D. Brosofske, and R. J. Naiman.  1998.  Modelling air temperature gradients across managed small streams in Western Washington.  Journal of Environmental Management 53(4): 309-321. [PDF]

131.            Saunders, C.S., J. Chen, T.R. Crow, and K.D. Brosofske.  1998.  Hierarchical relationships between landscape structure and temperature in a managed forest landscape.  Landscape Ecology 13: 381-395. [PDF]

132.            Naiman, R.J., K.L. Fetherston, S. Mckay, and J. Chen.   1998.  Riparian Forests.  Pages: 289-323, in Naiman, R.J. and R.E. Bilby (Eds.), Ecology and Management of Streams and Rivers in the Pacific Northwest Coastal Ecoregion.  Springer-verlag.   [PDF]

133.            Chen, J.  1997.  Stream networks and the dynamics of riparian vegetation.  Modern China Studies 58(3): 131-139.  [PDF]

134.            Silbernagel, J. Chen, J.M., M.R. Gale, K.S. Pregitzer, and J. Probst.  1997.  An interpretation of landscape structure from historic and present land cover data in the Upper Peninsula of Michigan.  USDA Forest Service General Technical Report Nc-192.   [PDF]

135.            Brosofske, K.D., J. Chen, R.J. Naiman, and J.F. Franklin.  1997.  Harvesting effects on microclimatic gradients from streams to uplands in Western Washington, USA.  Ecological Applications 7(4): 1188-1200. [PDF]

136.            Chen, J., M. Xu, and K.D. Brosofske.  1997.  Microclimatic characteristics in southeastern Missouri’s Ozarks.  USDA Forest Service General Technical Report  NC-193: 120-133.  [PDF]

137.            Xu, M., S.D. Saunders, and J. Chen.  1997.  Landscape structure within the Southeast Missouri Ozarks.  USDA Forest Service General Technical Report  NC-193: 41-53. [PDF]

138.            Xu, M., J. Chen, and B.L. Brookshire.  1997.  Temperature and its variability in the oak forests of Southeast Missouri’s Ozarks.  Climate Research 8(3): 209-223. [PDF]

139.            Song, B., J. Chen, P. Desanker, D.REED, J.F. Franklin, and G.A. Bradshaw.  1997.  Modeling canopy structure and heterogeneity across scales: from crown to canopy.  Forest Ecology and Management 96: 217-229. [PDF]

140.            Chen, J. and J.F. Franklin.  1997.  Growing-season microclimate variability within an old-growth Douglas-fir forest.  Climate Research 8(1): 27-34.  [PDF]

141.            Silbernagel, J. M., S.R. Martin, M.R. Gale, and J. Chen.  1996.  Prehistoric, historic, and present patterns related to landscape structure in the Eastern Upper Peninsula of Michigan.  Landscape Ecology 12(3): 223-240. [PDF]

142.            Chen, J.  1996.  Riparian vegetation and their functions in ecosystems.  Acta Applied Ecologica 7(4): 439-448. [PDF]

143.            Chen, J., J. F. Franklin, and J. S. Lowe.  1996.  Comparison of abiotic and structurally defined patch patterns in a hypothetical forest landscape.  Conservation Biology 10(3): 854-862.  [PDF]

144.            North, M, J. Chen, G. Smith, L. Krakowiak, and J.F. Franklin.  1996.  The response of understory plant species and overstory tree diameter growth to a new forestry harvest.  Northwest Science 70(1): 24-35. [PDF]

145.            Chen, J., J. F. Franklin, and T. A. Spies.  1995.  Growing season microclimatic gradients from clearcut edges into old-growth Douglas-fir forests from clearcut edges.  Ecological Applications 5(1): 74-86. [PDF]

146.            Chen, J.  1995.  Principles of landscape ecology and its applications in ecosystem management.  Pages 108-128.  In: B. Li (Ed.), Lectures in Modern Ecology.  Science Press, Beijing, China.  [PDF]

147.            Chen, J.  1994.  Landscape Ecology and Ecosystem Management.  Pages 69-70.  In: CAS (Ed.) Sustainable Development, Beijing, China.  [PDF]

148.            Chen, J., J. F. Franklin, and T. A. Spies.  1993.  An empirical model for predicting diurnal air-temperature gradients from clearcut-forest edge into old-growth Douglas-fir forest.  Ecological Modelling 67: 179-198. [PDF]

149.            Chen, J., J. F. Franklin, and T. A. Spies.  1993.  Contrasting microclimatic patterns among clearcut, edge, and interior area of old-growth Douglas-fir forest.  Agricultural and Forest Meteorology 63(3/4): 219-237. [PDF]

150.            Chen, J., J. F. Franklin, and T. A. Spies.  1992.  Vegetation responses to edge environments in old-growth Douglas-fir forests.  Ecological Applications 2(4): 387-396.  [PDF]

151.            Chen, J., J. F. Franklin, and T. A. Spies.  1990.  Microclimatic pattern and basic biological responses at the edges of old-growth Douglas-fir stands.  The Northwest Environmental Journal 6(2): 424-425.  [PDF]